PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004513076.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C3H
Protein Properties Length: 365aa    MW: 40701.5 Da    PI: 7.6251
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004513076.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.71.7e-07130150526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C++f++ G Ck Gd C +aHg
  XP_004513076.1 130 ACPDFRK-GNCKKGDACEYAHG 150
                     7******.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501036.0877114IPR000571Zinc finger, CCCH-type
SMARTSM003567.9E-6125151IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.695126152IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-5130150IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4130152IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.643160184IPR000571Zinc finger, CCCH-type
SMARTSM0035614160183IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MMIRANPTVH VPPWPINEDP MAEIYSSYYA DDSNAGAGDY SPYYLREALT ALQRYLPSNE  60
LDADSDSEFP GRESDSPVDA YSCDHFRMYE FKIRRCARGR SHDWTECPYA HPGEKARRRD  120
PRKFHYSGTA CPDFRKGNCK KGDACEYAHG VFECWLHPAR YRTQPCKDGT SCRRRVCFFA  180
HTPEQIRLNV QQSSRSINSP DSYDGSPLRQ LALPFMSSPV SVSPTESPTM SPKSLGSSSV  240
NEMVASLRNL QLGKMKSMPP NRNNVKIGSP GFGSPRGSVF RPGFCSLPNT PTQVSGSGRV  300
GVGYFDLWDQ SCEEEPMMER VESGRDIRAK MFEKLSKENS LGNSDPGLGQ SGGAPDVGWV  360
SELLK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004513076.10.0PREDICTED: zinc finger CCCH domain-containing protein 20
SwissprotO821991e-137C3H20_ARATH; Zinc finger CCCH domain-containing protein 20
TrEMBLA0A0S3TDA00.0A0A0S3TDA0_PHAAN; Uncharacterized protein
TrEMBLA0A0L9VGW70.0A0A0L9VGW7_PHAAN; Uncharacterized protein
STRINGGLYMA07G15240.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20563176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-138C3H family protein